STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
feoBFe(II) import system, GTP-binding protein B. (635 aa)    
Predicted Functional Partners:
RCIX1349
Fe-dependent transcription repressor (FeoA family).
 
  
 0.885
RCIX1350
Cation-transporting P-type ATPase.
 
    0.584
RCIX1574
Putative Fe-S cluster assembly protein (SufC-like).
 
   
 0.576
RCIX2300
Predicted cation efflux protein.
 
   
 0.548
LRC111
Putative transporter (NRAMP family).
     
 0.528
RCIX1345
Hypothetical protein.
       0.482
nrdG
Anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent) activating enzyme.
 
   
 0.479
RCIX1573
Putative Fe-S cluster assembly protein (SufB/D-like).
 
   
 0.458
RCIX2610
Putative hydrolase (HAD superfamily).
  
    0.447
nifS
Putative cysteine desulfurase.
 
   
 0.444
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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