Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1349Fe-dependent transcription repressor (FeoA family). (222 aa)    
Predicted Functional Partners:
feoB
Fe(II) import system, GTP-binding protein B.
 
  
 0.944
RCIX1001
Putative ABC-type transport system, permease component (ABC-3 family).
 
  
 0.571
echC
Ech hydrogenase, subunit C.
    
   0.554
RCIX2382
Hydrogenase, small subunit-like protein (HycG-like).
    
   0.554
RCIX483
[NiFe]-hydrogenase, small subunit (EchC-like).
    
   0.554
RCIX1350
Cation-transporting P-type ATPase.
     
 0.536
RCIX1000
Predicted ABC-type transport system, periplasmic component.
  
  
 0.508
RCIX1002
ABC-type transport system, ATPase component.
  
  
 0.502
RCIX1345
Hypothetical protein.
       0.482
rpoB1
DNA-directed RNA polymerase, subunit B1; Belongs to the RNA polymerase beta chain family.
   
 
 0.467
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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