STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspA-3Putative universal stress protein A. (263 aa)    
Predicted Functional Partners:
actP
Putative acetate permease (Na(+)/solute symporter family); Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
   
 0.836
RCIX130
Conserved hypothetical protein.
 
     0.586
RCIX132
Conserved hypothetical protein.
 
     0.555
uspA-6
Putative universal stress protein A.
  
     0.520
RCIX138
Conserved hypothetical protein.
       0.511
RCIX168
Conserved hypothetical protein.
  
     0.454
RCIX131
Hypothetical protein.
       0.442
RCIX134
Conserved hypothetical protein.
       0.442
gap
Glyceraldehyde-3-phosphate dehydrogenase.
 
  
 0.427
erf1
Translation termination factor; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
 
  
 0.415
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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