Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1350Cation-transporting P-type ATPase. (826 aa)    
Predicted Functional Partners:
RCIX2446
Predicted membrane protease subunit (stomatin family).
   
 0.632
RCIX1862
Conserved GTP-binding protein (Ras family).
   
 0.628
RCIX2180
ABC-type transport system, ATPase component.
  
 
 0.612
rps5p
30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
    
 
 0.599
rps13p
Putative 30S ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
   
 
 0.596
rps8p
30S ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
   0.593
feoB
Fe(II) import system, GTP-binding protein B.
 
  
 0.590
rps9p
30S ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
    
 
 0.586
rps2p
30S ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.
   
 
 0.579
rps15p
30S ribosomal protein S15P.
   
 
 0.569
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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