Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1356Hypothetical protein. (380 aa)    
Predicted Functional Partners:
RCIX1357
Hypothetical protein.
       0.507
RCIX414
Hypothetical protein; Similar to RCIX409 and RCIX412.
  
     0.464
LRC190
Hypothetical protein.
  
     0.461
RCIX2504
Hypothetical protein.
  
     0.460
RRC20
Hypothetical protein.
  
   
 0.455
RCIX1785
Putative transcription regulator (TrmB family).
  
     0.445
RRC479
Hypothetical protein.
  
     0.443
RCIX377
Conserved hypothetical protein.
  
     0.441
RCIX510
Hypothetical protein.
  
   
 0.437
RCIX1999
Hypothetical protein.
  
     0.436
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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