STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1387Conserved hypothetical protein. (282 aa)    
Predicted Functional Partners:
RCIX1386
Conserved hypothetical protein.
 
   
 0.875
RCIX690
Conserved hypothetical protein.
  
     0.714
gldA
Glycerol-1-phosphate dehydrogenase (NAD[P]); Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1- phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea. Belongs to the glycerol-1-phosphate dehydrogenase family.
     
 0.699
RCIX1384
Conserved hypothetical protein.
 
   
 0.675
RCIX1858
Conserved hypothetical protein.
  
     0.658
RCIX2449
Conserved hypothetical protein.
  
     0.631
RCIX1860
Conserved hypothetical protein.
  
     0.611
RCIX2680
Conserved hypothetical protein.
  
     0.600
rpoF
DNA-directed RNA polymerase, subunit F.
  
     0.596
hmfA
Archaeal histone A.
  
     0.594
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.