Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RCIX1387Conserved hypothetical protein. (282 aa)    
Predicted Functional Partners:
gldA
Glycerol-1-phosphate dehydrogenase (NAD[P]); Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1- phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea. Belongs to the glycerol-1-phosphate dehydrogenase family.
     
 0.914
RCIX1386
Conserved hypothetical protein.
 
   
 0.909
LRC435
Conserved hypothetical protein; Belongs to the UPF0179 family.
 
   
 0.831
RCIX1384
Conserved hypothetical protein.
 
   
 0.766
RCIX690
Conserved hypothetical protein.
  
     0.714
RCIX1858
Conserved hypothetical protein.
  
     0.658
RCIX2449
Conserved hypothetical protein.
  
     0.631
RCIX1860
Conserved hypothetical protein.
  
     0.611
suhB
Archaeal specific fructose-1,6-bisphosphatase/inositol-1-monophosphatase.
       0.608
RCIX2680
Conserved hypothetical protein.
  
     0.600
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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