Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1398Hypothetical protein. (115 aa)    
Predicted Functional Partners:
prx1-1
Putative 1-cysteine peroxiredoxin.
 
  
 0.681
emrB
Multidrug resistance transport system, permease component.
     
 0.595
cheC
Chemotaxis MCP methylation-inhibitor.
   
   0.585
RCIX2603
Predicted chemotaxis protein (CheW/CheC-like).
   
   0.585
dnaK
Chaperonin Hsp70; Acts as a chaperone.
 
  
 0.470
LRC228
Putative cytochrome c biogenesis protein.
 
   
 0.433
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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