hsp20-3 protein (Methanocella arvoryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hsp20-3

Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family. (144 aa)

Predicted Functional Partners:

hsp20-2

0.954

hsp20-1

0.903

dnaK

0.669

rpl10e-2

0.659

glnA-1

0.654

glnA-2

0.654

pcrA

0.620

LRC445

0.605

dnaJ

0.605

RCIX1090

0.605

Your Current Organism:

Methanocella arvoryzae

NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LRC445	dnaK	LRC445	LRC471	Putative chaperonin (DnaJ family), N-terminal fragment.	Chaperonin Hsp70; Acts as a chaperone.	0.991
LRC445	hsp20-1	LRC445	RCIX298	Putative chaperonin (DnaJ family), N-terminal fragment.	Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.605
LRC445	hsp20-2	LRC445	RCIX687	Putative chaperonin (DnaJ family), N-terminal fragment.	Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.571
LRC445	hsp20-3	LRC445	RCIX1409	Putative chaperonin (DnaJ family), N-terminal fragment.	Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.605
LRC445	pcrA	LRC445	LRC310	Putative chaperonin (DnaJ family), N-terminal fragment.	Putative ATP-dependent DNA helicase; Identical to orf21 of fosmid clone 3D10mr4.	0.448
LRC445	rpl10e-2	LRC445	RCIX1996	Putative chaperonin (DnaJ family), N-terminal fragment.	50S ribosomal protein L10E; Belongs to the universal ribosomal protein uL16 family.	0.706
RCIX1090	dnaK	RCIX1090	LRC471	Predicted Zn-finger protein interacting with DnaK (DnaJ-like).	Chaperonin Hsp70; Acts as a chaperone.	0.990
RCIX1090	hsp20-1	RCIX1090	RCIX298	Predicted Zn-finger protein interacting with DnaK (DnaJ-like).	Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.605
RCIX1090	hsp20-2	RCIX1090	RCIX687	Predicted Zn-finger protein interacting with DnaK (DnaJ-like).	Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.571
RCIX1090	hsp20-3	RCIX1090	RCIX1409	Predicted Zn-finger protein interacting with DnaK (DnaJ-like).	Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.605
RCIX1090	pcrA	RCIX1090	LRC310	Predicted Zn-finger protein interacting with DnaK (DnaJ-like).	Putative ATP-dependent DNA helicase; Identical to orf21 of fosmid clone 3D10mr4.	0.405
RCIX1090	rpl10e-2	RCIX1090	RCIX1996	Predicted Zn-finger protein interacting with DnaK (DnaJ-like).	50S ribosomal protein L10E; Belongs to the universal ribosomal protein uL16 family.	0.706
dnaJ	dnaK	LRC468	LRC471	Chaperonin Hsp40; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK an [...]	Chaperonin Hsp70; Acts as a chaperone.	0.999
dnaJ	hsp20-1	LRC468	RCIX298	Chaperonin Hsp40; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK an [...]	Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.605
dnaJ	hsp20-2	LRC468	RCIX687	Chaperonin Hsp40; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK an [...]	Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.571
dnaJ	hsp20-3	LRC468	RCIX1409	Chaperonin Hsp40; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK an [...]	Chaperonin Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.605
dnaJ	pcrA	LRC468	LRC310	Chaperonin Hsp40; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK an [...]	Putative ATP-dependent DNA helicase; Identical to orf21 of fosmid clone 3D10mr4.	0.400
dnaJ	rpl10e-2	LRC468	RCIX1996	Chaperonin Hsp40; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK an [...]	50S ribosomal protein L10E; Belongs to the universal ribosomal protein uL16 family.	0.706
dnaK	LRC445	LRC471	LRC445	Chaperonin Hsp70; Acts as a chaperone.	Putative chaperonin (DnaJ family), N-terminal fragment.	0.991
dnaK	RCIX1090	LRC471	RCIX1090	Chaperonin Hsp70; Acts as a chaperone.	Predicted Zn-finger protein interacting with DnaK (DnaJ-like).	0.990

page 1 of 4

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About