Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1420Putative transcriptional regulator (ArsR family). (282 aa)    
Predicted Functional Partners:
RRC285
Hypothetical protein.
  
     0.628
LRC454
Conserved hypothetical protein.
  
     0.604
RCIX1274
Putative transcription regulator (ArsR family).
  
   
 0.575
RCIX2200
Conserved hypothetical protein.
  
     0.546
RCIA104
Hypothetical protein.
       0.518
gsp-1
Putative bacterial type II secretion system protein.
  
     0.516
RCIX439
Hypothetical protein.
  
     0.476
RCIX2250
Predicted peptidase (A24 family).
  
     0.472
RCIX1897
Conserved hypothetical protein.
  
     0.471
RCIX1732
Conserved hypothetical protein.
  
     0.449
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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