Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RCIX1428Conserved hypothetical protein. (285 aa)    
Predicted Functional Partners:
uspA-5
Universal stress protein A.
  
    0.943
RCIX1426
Putative amidohydrolase.
  
    0.923
ribD
2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase; 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine 1-reductase (riboflavin-specific deaminase).
  
  
 0.750
LRC65
Conserved hypothetical protein.
 
    0.723
rpl29p
50S ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.
 
 
 0.716
rpl6p
50S ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
 
   0.712
rps19p
30S ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
 
   0.708
rps2p
30S ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.
  
   0.704
rpl44e
50S ribosomal protein L44E; Binds to the 23S rRNA.
  
 
   0.699
rpl30p
50S ribosomal protein L30P.
 
 
 0.698
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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