Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
gluHABC-type glutamate import system, periplasmic component. (260 aa)    
Predicted Functional Partners:
gluP
ABC-type glutamate import system, permease component.
 
 0.997
gluQ
ABC-type glutamate import system, ATP-binding protein.
 
 
 0.981
argH
Argininosuccinate lyase.
 
  
 0.565
cheC
Chemotaxis MCP methylation-inhibitor.
   
   0.542
RCIX2603
Predicted chemotaxis protein (CheW/CheC-like).
   
   0.542
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.530
LRC377
Putative ABC-type peptide transport system,periplasmic component.
 
  
 0.501
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
  
  
 0.472
RCIX1890
Putative response regulator.
   
 
 0.429
RRC348
Predicted TRAP-type transport system, periplasmic component.
 
  
 0.426
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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