Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1472Putative oligosaccharide repeat unit transporter. (421 aa)    
Predicted Functional Partners:
tnp-16
Transposase (IS4).
 
     0.652
frhB-3
Putative coenzyme F420 hydrogenase, beta subunit.
       0.604
rfbC
dTDP-4-dehydrorhamnose 3,5 epimerase.
 
  
 0.598
RCIX1473
Hypothetical protein.
  
  
 0.592
rfbB-1
dTDP-glucose 4,6-dehydratase.
  
  
 0.549
ugd
UDP-glucose 6-dehydrogenase.
  
  
 0.549
wecB
UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.535
RCIX2643
Conserved hypothetical protein.
  
     0.483
RCIX1491
Conserved hypothetical protein.
 
    0.478
RRC427
Conserved hypothetical protein.
 
    0.469
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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