Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1501Hypothetical protein. (581 aa)    
Predicted Functional Partners:
RCIX2037
Hypothetical protein.
  
     0.666
RCIX2203
Hypothetical protein.
  
     0.664
RCIX533
Hypothetical protein.
  
     0.650
RRC213
Hypothetical protein.
  
     0.490
RCIX2105
Putative amino acid kinase.
 
     0.481
fae
Putative formaldehyde-activating enzyme.
  
     0.471
RCIX1500
Putative acetyltransferase (GNAT family).
       0.466
RCIX1510
Dihydropteroate synthase-like conserved protein (FolP-like).
 
    0.461
LRC185
Predicted archaea-specific kinase (GHMP family); Catalyzes the condensation of 4-aminobenzoate (pABA) with 5- phospho-alpha-D-ribose 1-diphosphate (PRPP) to produce beta- ribofuranosylaminobenzene 5'-phosphate (beta-RFA-P).
  
     0.456
hisA-1
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; Belongs to the HisA/HisF family.
  
     0.451
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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