Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
copACu(2+)-binding/translocating P-type ATPase. (812 aa)    
Predicted Functional Partners:
RRC234
Transcription regulator (AsnC/Lrp family).
     
 0.960
RCIX1788
Conserved hypothetical protein.
     
 0.914
RCIX2336
Putative transcription regulator (ArsR family).
  
  
 0.868
RRC76
Putative transcription regulator (ArsR family).
  
  
 0.868
trxA-1
Thioredoxin.
 
   
 0.848
trxA-2
Thioredoxin.
 
   
 0.846
LRC165
Putative hydrolase (haloacid dehalogenase-like).
  
     0.683
RCIX1518
Predicted oligopeptide transporter (OPT superfamily).
       0.609
modA
ABC-type molybdenum import system, periplasmic component.
     
 0.528
RCIX769
Predicted membrane-bound metal-dependent hydrolase.
      
 0.516
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
Server load: low (18%) [HD]