Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1549Conserved hypothetical protein; Similar to orf20 (predicted lipoate synthase) of fosmid clone 1B6mr2. (330 aa)    
Predicted Functional Partners:
RCIX2643
Conserved hypothetical protein.
 
     0.755
RCIX2650
Conserved hypothetical protein.
 
     0.618
RRC338
Conserved hypothetical protein.
  
     0.569
RCIX452
Conserved hypothetical protein.
  
   
 0.530
RCIX1172
Conserved hypothetical protein.
  
     0.529
RCIX2200
Conserved hypothetical protein.
  
     0.512
LRC236
Conserved hypothetical protein.
  
     0.505
thiL-1
Putative thiamin-monophosphate kinase.
 
     0.505
RCIX449
Conserved hypothetical protein.
  
     0.503
gpi
Putative glucose-6-phosphate isomerase.
  
     0.493
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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