STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1565Predicted ABC-type sulfonate transport system,periplasmic component. (309 aa)    
Predicted Functional Partners:
ssuB
Putative ABC-type sulfonate import system, ATPase component.
 
  
 0.872
ssuC
Putative ABC-type sulfonate import system,permease component.
 
  
 0.868
RCIX1567
ThiS/MoaD sulfur transfer protein.
 
   
 0.711
RCIX1566
ThiF/MoeB sulfur transfer protein.
  
  
 0.639
iscS
Class V aminotransferase (NifS-like); Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
     
 0.627
RCIX1564
Putative Fe-S cluster assembly protein (NifU-like).
     
 0.627
mer
N(5),N(10)-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
 
  
 0.540
RRC291
Predicted NADPH-dependent FMN reductase.
  
  
 0.501
RRC285
Hypothetical protein.
 
     0.498
comD
Sulfopyruvate decarboxylase, alpha chain.
 
    0.467
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.