Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCIX1568ABC-type transport system, ATPase component. (269 aa)    
Predicted Functional Partners:
RCIX1569
Conserved hypothetical protein (HypB/CobW-like).
 
  
 0.998
RCIX1571
Predicted redox-active protein (CxxC motives).
 
    0.997
hypB
Hydrogenase expression/formation protein (maturation factor).
 
  
 0.861
thrC-2
Threonine synthase; Specifically catalyzes the beta-elimination of phosphate from L-phosphoserine and the beta-addition of sulfite to the dehydroalanine intermediate to produce L-cysteate.
 
     0.821
RCIX1570
Class V aminotransferase (NifS-like).
     
 0.781
comD
Sulfopyruvate decarboxylase, alpha chain.
       0.772
RCIX1296
Predicted ABC-type transport system, permease component.
  
 
 0.763
RCIX1298
Predicted ABC-type transport system, permease component.
  
 
 0.763
RCIX2314
ABC-type transport system, permease component.
  
 
 0.763
RRC182
2(4Fe-4S) ferredoxin-domain protein.
       0.597
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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