STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1574Putative Fe-S cluster assembly protein (SufC-like). (250 aa)    
Predicted Functional Partners:
RCIX1573
Putative Fe-S cluster assembly protein (SufB/D-like).
 
 0.999
nifS
Putative cysteine desulfurase.
 
  
 0.997
RCIX1564
Putative Fe-S cluster assembly protein (NifU-like).
  
  
 0.981
RCIX652
HesB family protein.
  
 
 0.837
feoB
Fe(II) import system, GTP-binding protein B.
 
   
 0.576
trxB-2
NADPH:thioredoxin reductase (TrxR).
 
  
 0.470
LRC112
Conserved hypothetical protein; Belongs to the UPF0145 family.
  
  
 0.456
dnaK
Chaperonin Hsp70; Acts as a chaperone.
 
  
 0.454
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
       0.450
trxB-1
NADPH:thioredoxin reductase (TrxR).
 
  
 0.438
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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