Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
gdh-1 | gdh-2 | LRC421 | LRC422 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.941 |
gdh-1 | glnA-1 | LRC421 | RCIX649 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamine synthetase I. | 0.924 |
gdh-1 | glnA-2 | LRC421 | RCIX942 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamine synthetase I. | 0.924 |
gdh-1 | hcp | LRC421 | RCIX1699 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Prismane protein (hybrid cluster protein); Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.912 |
gdh-1 | nifD | LRC421 | RCIX1611 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrogenase molybdenum-iron protein, subunit alpha (dinitrogenase). | 0.905 |
gdh-1 | nifH-1 | LRC421 | RCIX1606 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrogenase iron protein (nitrogenase reductase); The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.911 |
gdh-1 | nifK | LRC421 | RCIX1613 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrogenase molybdenum-iron protein, subunit beta (dinitrogenase); Belongs to the NifD/NifK/NifE/NifN family. | 0.905 |
gdh-2 | gdh-1 | LRC422 | LRC421 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.941 |
gdh-2 | glnA-1 | LRC422 | RCIX649 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamine synthetase I. | 0.924 |
gdh-2 | glnA-2 | LRC422 | RCIX942 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamine synthetase I. | 0.924 |
gdh-2 | hcp | LRC422 | RCIX1699 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Prismane protein (hybrid cluster protein); Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.912 |
gdh-2 | nifD | LRC422 | RCIX1611 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrogenase molybdenum-iron protein, subunit alpha (dinitrogenase). | 0.905 |
gdh-2 | nifH-1 | LRC422 | RCIX1606 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrogenase iron protein (nitrogenase reductase); The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.911 |
gdh-2 | nifK | LRC422 | RCIX1613 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Nitrogenase molybdenum-iron protein, subunit beta (dinitrogenase); Belongs to the NifD/NifK/NifE/NifN family. | 0.905 |
glnA-1 | gdh-1 | RCIX649 | LRC421 | Glutamine synthetase I. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.924 |
glnA-1 | gdh-2 | RCIX649 | LRC422 | Glutamine synthetase I. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.924 |
glnA-1 | glnA-2 | RCIX649 | RCIX942 | Glutamine synthetase I. | Glutamine synthetase I. | 0.908 |
glnA-1 | hcp | RCIX649 | RCIX1699 | Glutamine synthetase I. | Prismane protein (hybrid cluster protein); Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. | 0.919 |
glnA-1 | nifD | RCIX649 | RCIX1611 | Glutamine synthetase I. | Nitrogenase molybdenum-iron protein, subunit alpha (dinitrogenase). | 0.928 |
glnA-1 | nifH-1 | RCIX649 | RCIX1606 | Glutamine synthetase I. | Nitrogenase iron protein (nitrogenase reductase); The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein. | 0.924 |
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