Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdx12Fe-2S ferredoxin. (102 aa)    
Predicted Functional Partners:
gltD
NADPH-dependent glutamate synthase, small subunit.
   
 
 0.871
nifN
Nitrogenase molybdenum-iron cofactor biosynthesis protein; Belongs to the NifD/NifK/NifE/NifN family.
 
   
 0.870
nifE
Nitrogenase molybdenum-iron cofactor biosynthesis protein; Belongs to the NifD/NifK/NifE/NifN family.
 
   
 0.826
RCIX1618
Conserved hypothetical protein.
 
     0.820
nifK
Nitrogenase molybdenum-iron protein, subunit beta (dinitrogenase); Belongs to the NifD/NifK/NifE/NifN family.
 
   
 0.762
nifD
Nitrogenase molybdenum-iron protein, subunit alpha (dinitrogenase).
 
   
 0.744
nifl-2
Nitrogen regulator (P-II family).
 
     0.716
nifl-1
Nitrogen regulator (P-II family).
 
     0.689
nifH-1
Nitrogenase iron protein (nitrogenase reductase); The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.
     
 0.685
fdx4-2
4(4Fe-4S) polyferredoxin.
   
   0.614
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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