STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdx12Fe-2S ferredoxin. (102 aa)    
Predicted Functional Partners:
nifN
Nitrogenase molybdenum-iron cofactor biosynthesis protein; Belongs to the NifD/NifK/NifE/NifN family.
 
   
 0.835
nifE
Nitrogenase molybdenum-iron cofactor biosynthesis protein; Belongs to the NifD/NifK/NifE/NifN family.
 
   
 0.825
RCIX1618
Conserved hypothetical protein.
 
     0.820
frhG-2
Coenzyme F420-reducing hydrogenase, gamma subunit.
 
 
   0.759
nifK
Nitrogenase molybdenum-iron protein, subunit beta (dinitrogenase); Belongs to the NifD/NifK/NifE/NifN family.
 
   
 0.750
nifD
Nitrogenase molybdenum-iron protein, subunit alpha (dinitrogenase).
 
   
 0.741
frhG-1
Coenzyme F420-reducing hydrogenase, gamma subunit.
   
   0.724
mvhG-1
Coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), gamma subunit.
   
   0.724
mvhG-2
Coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), gamma subunit.
   
   0.724
nifl-2
Nitrogen regulator (P-II family).
 
     0.720
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.