STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX162Putative K(+) uptake system, NAD-binding component. (216 aa)    
Predicted Functional Partners:
RCIX163
Putative K(+) uptake system, membrane component.
 
 
 0.990
RRC145
Putative K(+) uptake system, membrane component.
 
 
 0.972
RRC457
Putative K(+) uptake system, membrane component.
 
 
 0.972
mobB
Molybdopterin-guanine dinucleotide biosynthesis protein.
  
    0.668
LRC167
Conserved hypothetical protein; Belongs to the UPF0288 family.
   
    0.578
hemD
uroporphyrinogen-III synthase.
  
    0.522
LRC157
Putative tRNA/rRNA cytosine-C5-methylase (Nop2/Sun family); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
    0.407
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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