Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdhA-1Formate dehydrogenase, alpha subunit. (686 aa)    
Predicted Functional Partners:
fdhB-1
Formate dehydrogenase, beta subunit.
  
 0.992
fdhB-2
Formate dehydrogenase, beta subunit.
  
 0.981
fdhB-3
Formate dehydrogenase, beta subunit.
  
 0.981
fdhB-4
Formate dehydrogenase, beta subunit.
  
 0.981
fmdB
Predicted molybdenum formylmethanofuran dehydrogenase, subunit B.
 
 
0.913
fwdA-1
Tungsten formylmethanofuran dehydrogenase,subunit A.
  
 0.913
fwdA-2
Tungsten formylmethanofuran dehydrogenase,subunit A.
  
 0.913
fdh
NAD-dependent formaldehyde dehydrogenase.
    
 0.909
fwdB-1
Tungsten formylmethanofuran dehydrogenase,subunit B.
 
 
0.909
fwdB-2
Tungsten formylmethanofuran dehydrogenase,subunit B.
 
 
0.909
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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