STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1649Putative serine/threonine protein phosphatase. (230 aa)    
Predicted Functional Partners:
RCIX1862
Conserved GTP-binding protein (Ras family).
   
 0.865
LRC70
Putative DNA/RNA helicase (SNF2 family).
   
 
 0.825
RRC248
Hypothetical protein.
   
 0.818
RRC278
Hypothetical protein.
   
 0.818
eif2a
Translation initiation factor 2, alpha subunit.
   
 
 0.791
RCIX2327
Conserved hypothetical protein.
  
 
 0.786
dnaK
Chaperonin Hsp70; Acts as a chaperone.
   
 
 0.766
LRC353
mRNA 3-end processing factor.
   
 
 0.757
RCIX1272
Conserved hypothetical protein.
   
 
 0.757
arsB
Arsenite efflux transporter.
       0.746
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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