Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1650Hypothetical protein. (161 aa)    
Predicted Functional Partners:
RCIX1651
Predicted cytochrome c biogenesis protein.
 
     0.976
RCIX1653
Conserved hypothetical protein.
 
     0.699
RCIX1654
Glutaredoxin-like protein; Does not function as a glutathione-disulfide oxidoreductase in the presence of glutathione and glutathione reductase. Has low thioredoxin activity in vitro.
 
     0.587
RCIX2504
Hypothetical protein.
  
     0.580
LRC452
Hypothetical protein.
  
     0.559
LRC487
Hypothetical protein.
  
     0.548
RCIX2146
Hypothetical protein.
  
     0.530
RCIX759
Hypothetical protein.
  
     0.522
RRC20
Hypothetical protein.
  
     0.522
RRC34
Hypothetical protein.
  
     0.509
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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