Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1658Hypothetical protein. (449 aa)    
Predicted Functional Partners:
RCIX1675
Putative bacteriophage protein.
 
 
 0.997
RCIX1676
Hypothetical protein.
 
 
 0.988
RCIX1671
Conserved hypothetical protein.
 
   
 0.939
RCIX1667
Hypothetical protein.
 
     0.912
RCIX1665
Hypothetical protein.
 
     0.903
RCIX1660
Hypothetical protein.
       0.795
RCIX1661
Hypothetical protein.
       0.753
RCIX1662
Hypothetical protein.
       0.752
RCIX1673
Conserved hypothetical protein.
 
  
 0.751
RCIX1663
Hypothetical protein.
       0.716
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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