STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1707Conserved hypothetical protein. (271 aa)    
Predicted Functional Partners:
tatA
Sec-independent protein translocase (twin-arginine translocation protein); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
 
 0.897
LRC383
Putative sec-independent protein translocase (TatA-like).
   
 
 0.882
RCIX2446
Predicted membrane protease subunit (stomatin family).
  
 0.840
RCIX1705
Conserved hypothetical protein.
 
     0.578
RCIX1703
Putative Na(+)/phosphate symporter.
  
    0.453
RCIX1709
Predicted amylo-alpha-1,6-glucosidase.
       0.429
LRC110
Predicted cation transporter.
 
 
 
 0.421
RCIX2353
Protoporphyrinogen oxidase-related protein (HemK-like).
 
   
 0.414
RRC480
Putative trypsin-like protease.
 
 
 0.414
RCIX1595
Putative trypsin-like protease.
 
 
 0.409
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.