Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1718Conserved hypothetical protein. (165 aa)    
Predicted Functional Partners:
LRC313
Hypothetical protein; Identical to orf24 of fosmid clone 3D10mr4, similar to orf23 and orf25 of fosmid clone 3D10mr4.
  
     0.654
RCIX481
Putative hydrogenase membrane component (EchB-like).
    
 
 0.562
echD
Ech hydrogenase, subunit D.
    
   0.554
RCIX482
Putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like).
  
 
   0.542
LRC563
Hypothetical protein.
  
     0.499
echF
Ech hydrogenase, subunit F.
    
   0.473
LRC314
Hypothetical protein; Identical to orf25 of fosmid clone 3D10mr4, similar to orf23 and orf24 of fosmid clone 3D10mr4.
  
     0.419
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.