STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX176Conserved hypothetical protein. (251 aa)    
Predicted Functional Partners:
idhA
Putative myo-inositol 2-dehydrogenase.
  
  
 0.682
RCIX1330
Conserved hypothetical protein.
  
     0.660
RCIX178
Putative permease (major facilitator superfamily).
  
    0.599
pfkB-2
Putative ATP-dependent phosphofructokinase (PFK-B family); Belongs to the carbohydrate kinase PfkB family.
 
  
 0.537
RCIX724
Conserved hypothetical protein.
  
     0.536
LRC199
Conserved hypothetical protein; Similar to orf18 of fosmid clone 1B6mr2.
  
     0.528
pfkB-1
Putative ATP-dependent phosphofructokinase (PFK-B family).
 
  
 0.503
LRC336
Conserved hypothetical protein.
 
  
 0.458
fbaA
Fructose-bisphosphate aldolase (class II).
  
  
 0.456
mcrB
Methyl-coenzyme M reductase, beta subunit.
  
     0.446
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.