Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cbiO-3Putative ABC-type cobalt import system, ATPase component. (261 aa)    
Predicted Functional Partners:
cbiQ-3
Putative ABC-type cobalt import system, permease component.
 
 0.998
bioY
Biotin synthesis protein Y.
 
 
 0.997
cbiO-4
Putative ABC-type cobalt import system, ATPase component.
 
  
 
0.990
cbiQ-2
Putative ABC-type cobalt import system, permease component.
 
 0.976
LRC577
Putative ABC-type cobalt transport system,permease coponent.
 
 0.903
cbiQ-1
Putative ABC-type cobalt import system, permease component.
 
 0.863
rpl5p
50S ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
 
  
 0.611
cbiO-2
Putative ABC-type cobalt import system, ATPase component.
 
  
 
0.607
RCIX1761
Predicted regulator of chromosome condensation.
       0.594
LRC578
Putative ABC-type cobalt transport system, ATPase component.
  
  
 
0.590
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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