Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1775ABC-type transport system, ATPase component. (274 aa)    
Predicted Functional Partners:
cbiQ-1
Putative ABC-type cobalt import system, permease component.
 
 0.965
LRC577
Putative ABC-type cobalt transport system,permease coponent.
 
 0.960
cbiM-1a
Cobalamin biosynthesis protein, N-terminal fragment.
 
 
 0.916
cbiO-1
Putative ABC-type cobalt import system, ATPase component.
  
  
 
0.910
LRC578
Putative ABC-type cobalt transport system, ATPase component.
  
  
 
0.902
cbiM-1b
Cobalamin biosynthesis protein, C-terminal fragment.
 
 
 0.887
cbiM-2
Putative cobalamin biosyntheis protein M.
 
 
 0.886
LRC380
Putative ABC-type peptide transport system,ATPase component 1.
 
   
0.855
cbiQ-2
Putative ABC-type cobalt import system, permease component.
 
 
 0.832
cbiQ-3
Putative ABC-type cobalt import system, permease component.
 
 
 0.824
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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