Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1840Putative response regulator (CheY-like). (130 aa)    
Predicted Functional Partners:
LRC568
Conserved hypothetical protein.
   
 
 0.703
RCIX1890
Putative response regulator.
 
 
 0.693
RRC477
Putative signal transduction histidine kinase.
 
 
 0.657
cheA
Chemotaxis histidine kinase.
  
  
 0.649
RCIX1277
Predicted signal transduction histidine kinase.
 
 
 
 0.641
RCIX170
Predicted signal transduction histidine kinase.
 
 
 
 0.630
LRC113
Predicted signal transduction histidine kinase.
 
 
 0.619
RRC490
Putative response regulator (CheY-like).
  
   
 0.598
RCIX1084
Putative signal transduction histidine kinase.
 
 
 0.589
cheW
Chemotaxis signal transducer.
  
 
 0.589
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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