Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1860Conserved hypothetical protein. (113 aa)    
Predicted Functional Partners:
RCIX1862
Conserved GTP-binding protein (Ras family).
 
   
 0.992
RCIX1858
Conserved hypothetical protein.
 
   
 0.987
RRC414
Conserved hypothetical protein.
       0.718
aat-1
Putative aspartate aminotransferase.
       0.692
RCIX282
Conserved hypothetical protein.
  
   
 0.671
RCIX1209
Hypothetical protein.
  
     0.670
secE
Putative preprotein translocase, subunit E; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.664
RCIX690
Conserved hypothetical protein.
 
     0.660
LRC429
Conserved hypothetical protein.
  
     0.652
RCIX407
Conserved hypothetical protein.
  
     0.652
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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