Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCIX1868Conserved hypothetical CBS domain protein. (259 aa)    
Predicted Functional Partners:
RCIX1867
Conserved hypothetical CBS domain protein.
 
 
  
0.989
RCIX1864
Conserved hypothetical CBS domain protein.
 
 
  
0.980
RCIX1863
Conserved hypothetical CBS domain protein.
 
    0.974
RCIX1866
Conserved hypothetical CBS domain protein.
 
    
0.960
RCIX1862
Conserved GTP-binding protein (Ras family).
  
 0.861
rps19p
30S ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
 
   0.796
rpl4p
50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel.
  
 
 0.781
rps28e
30S ribosomal protein S28E; Belongs to the eukaryotic ribosomal protein eS28 family.
  
 
 0.780
rps2p
30S ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.
  
   0.779
rpl3p
50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.774
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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