STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mscS-3Putative small-conductance mechanosensitive ion channel. (409 aa)    
Predicted Functional Partners:
RCIX1864
Conserved hypothetical CBS domain protein.
  
    0.617
RCIX1866
Conserved hypothetical CBS domain protein.
  
    0.617
RCIX1867
Conserved hypothetical CBS domain protein.
  
    0.617
RCIX1868
Conserved hypothetical CBS domain protein.
  
    0.617
RCIX1863
Conserved hypothetical CBS domain protein.
  
    0.597
RCIX1872
Hypothetical protein.
       0.539
RCIX1862
Conserved GTP-binding protein (Ras family).
 
     0.444
RCIX1354
Predicted nonsense mediated mRNA decay protein.
   
    0.434
RCIX1858
Conserved hypothetical protein.
 
     0.403
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine.
 
    0.402
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.