STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
echAEch hydrogenase, subunit A. (633 aa)    
Predicted Functional Partners:
echD
Ech hydrogenase, subunit D.
 
 
 0.997
RCIX481
Putative hydrogenase membrane component (EchB-like).
 
 
 0.995
echF
Ech hydrogenase, subunit F.
 
 
 0.994
echB
Ech hydrogenase, subunit B.
   
 0.983
RCIX482
Putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like).
 
 
 0.969
RCIX2387
Hydrogenase, membrane subunit 4-like protein (HycC-like).
 
 
0.952
RCIX2384
Hydrogenase, membrane subunit 1-like protein (EchA-like).
 
 
0.951
echE
Ech hydrogenase, subunit E.
 
   
 0.929
echC
Ech hydrogenase, subunit C.
 
  
 0.924
hdrA-1
Putative heterodisulfide reductase, subunit A; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B).
      
 0.858
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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