echB protein (Methanocella arvoryzae) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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protein homology

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Score

echB

Ech hydrogenase, subunit B. (306 aa)

Predicted Functional Partners:

echC

0.995

echE

0.993

echF

0.989

echA

0.983

echD

0.975

RCIX483

0.974

RCIX479

0.971

RCIX2382

0.970

RCIX2383

0.960

RCIX2387

0.939

Your Current Organism:

Methanocella arvoryzae

NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCIX2382	RCIX2383	RCIX2382	RCIX2383	Hydrogenase, small subunit-like protein (HycG-like).	Hydrogenase, large subunit-like protein (HycE-like).	0.996
RCIX2382	RCIX2387	RCIX2382	RCIX2387	Hydrogenase, small subunit-like protein (HycG-like).	Hydrogenase, membrane subunit 4-like protein (HycC-like).	0.988
RCIX2382	RCIX479	RCIX2382	RCIX479	Hydrogenase, small subunit-like protein (HycG-like).	[NiFe]-hydrogenase, large subunit (EchE-like).	0.984
RCIX2382	echA	RCIX2382	RCIX1882	Hydrogenase, small subunit-like protein (HycG-like).	Ech hydrogenase, subunit A.	0.548
RCIX2382	echB	RCIX2382	RCIX1883	Hydrogenase, small subunit-like protein (HycG-like).	Ech hydrogenase, subunit B.	0.970
RCIX2382	echD	RCIX2382	RCIX1886	Hydrogenase, small subunit-like protein (HycG-like).	Ech hydrogenase, subunit D.	0.437
RCIX2382	echE	RCIX2382	RCIX1887	Hydrogenase, small subunit-like protein (HycG-like).	Ech hydrogenase, subunit E.	0.986
RCIX2382	echF	RCIX2382	RCIX1888	Hydrogenase, small subunit-like protein (HycG-like).	Ech hydrogenase, subunit F.	0.923
RCIX2383	RCIX2382	RCIX2383	RCIX2382	Hydrogenase, large subunit-like protein (HycE-like).	Hydrogenase, small subunit-like protein (HycG-like).	0.996
RCIX2383	RCIX2387	RCIX2383	RCIX2387	Hydrogenase, large subunit-like protein (HycE-like).	Hydrogenase, membrane subunit 4-like protein (HycC-like).	0.993
RCIX2383	RCIX483	RCIX2383	RCIX483	Hydrogenase, large subunit-like protein (HycE-like).	[NiFe]-hydrogenase, small subunit (EchC-like).	0.968
RCIX2383	echA	RCIX2383	RCIX1882	Hydrogenase, large subunit-like protein (HycE-like).	Ech hydrogenase, subunit A.	0.527
RCIX2383	echB	RCIX2383	RCIX1883	Hydrogenase, large subunit-like protein (HycE-like).	Ech hydrogenase, subunit B.	0.960
RCIX2383	echC	RCIX2383	RCIX1884	Hydrogenase, large subunit-like protein (HycE-like).	Ech hydrogenase, subunit C.	0.993
RCIX2383	echD	RCIX2383	RCIX1886	Hydrogenase, large subunit-like protein (HycE-like).	Ech hydrogenase, subunit D.	0.530
RCIX2383	echF	RCIX2383	RCIX1888	Hydrogenase, large subunit-like protein (HycE-like).	Ech hydrogenase, subunit F.	0.921
RCIX2387	RCIX2382	RCIX2387	RCIX2382	Hydrogenase, membrane subunit 4-like protein (HycC-like).	Hydrogenase, small subunit-like protein (HycG-like).	0.988
RCIX2387	RCIX2383	RCIX2387	RCIX2383	Hydrogenase, membrane subunit 4-like protein (HycC-like).	Hydrogenase, large subunit-like protein (HycE-like).	0.993
RCIX2387	RCIX479	RCIX2387	RCIX479	Hydrogenase, membrane subunit 4-like protein (HycC-like).	[NiFe]-hydrogenase, large subunit (EchE-like).	0.913
RCIX2387	RCIX483	RCIX2387	RCIX483	Hydrogenase, membrane subunit 4-like protein (HycC-like).	[NiFe]-hydrogenase, small subunit (EchC-like).	0.910

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