STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
echFEch hydrogenase, subunit F. (150 aa)    
Predicted Functional Partners:
echD
Ech hydrogenase, subunit D.
 
 0.999
RCIX481
Putative hydrogenase membrane component (EchB-like).
 
 0.995
echA
Ech hydrogenase, subunit A.
 
 
 0.994
echB
Ech hydrogenase, subunit B.
 
 
 0.989
echC
Ech hydrogenase, subunit C.
 
 
 0.984
echE
Ech hydrogenase, subunit E.
 
 
 0.983
RCIX557
Predicted oxidoreductase integral membrane component (CooM/NuoL-like).
  
 
 0.963
RCIX479
[NiFe]-hydrogenase, large subunit (EchE-like).
 
 
 0.930
RCIX483
[NiFe]-hydrogenase, small subunit (EchC-like).
 
 
 0.926
RCIX2382
Hydrogenase, small subunit-like protein (HycG-like).
 
 
 0.923
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.