STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX1897Conserved hypothetical protein. (346 aa)    
Predicted Functional Partners:
RCIX1898
Conserved hypothetical protein.
       0.822
RCIX1899
ABC-type transport system, ATPase component.
 
  
 0.765
gsp-9
Putative bacterial type II secretion system protein.
 
     0.634
LRC454
Conserved hypothetical protein.
  
     0.632
RCIX412
Hypothetical protein; Similar to RCIX409 and RCIX414.
  
     0.622
RCIX1982
Hypothetical protein.
  
     0.618
RCIX1951
Conserved hypothetical protein; Similar to orf2, orf11, orf12, orf13, orf14, orf15 of fosmid clone 4B7mr3.
  
     0.615
RCIX2164
Hypothetical protein; Similar to orf2, orf11, orf12, orf13, orf14, orf15 of fosmid clone 4B7mr3.
  
     0.613
RCIX2215
Conserved hypothetical protein.
  
     0.601
RCIX409
Hypothetical protein; Similar to RCIX412 and RCIX414.
  
     0.592
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.