Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
RCIX1920Conserved transferase protein. (221 aa)    
Predicted Functional Partners:
idhA
Putative myo-inositol 2-dehydrogenase.
  
 0.997
RCIX1921
Aminotransferase (DegT family); Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.983
RCIX1924
Putative glycosyltransferase (family 2).
 
  
 0.893
RCIX1961
NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
   
 0.807
wecB
UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.785
RCIX1929
Conserved hypothetical protein.
 
    0.760
rfbA-4
Glucose-1-phosphate thymidylyltransferase.
 
  
 0.725
RCIX1925
Conserved hypothetical protein.
 
  
 0.691
RCIX1932
Conserved hypothetical protein.
 
   
 0.681
hisF-1
Imidazole glycerol phosphate synthase, cyclase subunit; Belongs to the HisA/HisF family.
     
 0.616
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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