STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capK-1Putative capsular polysaccharide biosynthesis protein. (447 aa)    
Predicted Functional Partners:
RCIX1933
Conserved hypothetical protein; Similar to orf2, orf11, orf12, orf13, orf14, orf15 of fosmid clone 4B7mr3.
 
     0.795
RCIX1932
Conserved hypothetical protein.
 
     0.777
RCIX1929
Conserved hypothetical protein.
 
     0.756
wecB
UDP-N-acetylglucosamine 2-epimerase.
 
     0.755
hisH-1
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
 
     0.747
RCIX1934
Conserved hypothetical protein.
       0.746
RCIX1925
Conserved hypothetical protein.
 
     0.744
hisF-1
Imidazole glycerol phosphate synthase, cyclase subunit; Belongs to the HisA/HisF family.
       0.709
RCIX1924
Putative glycosyltransferase (family 2).
 
     0.608
idhA
Putative myo-inositol 2-dehydrogenase.
       0.545
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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