Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1947Putative glycosyltransferase (family 2). (319 aa)    
Predicted Functional Partners:
RCIX1948
Conserved hypothetical protein.
 
  
 0.823
RCIX196
Glucosyltransferase (family 2).
 
     0.700
RCIX1950
Conserved hypothetical protein.
  
  
 0.604
RCIX1946
Conserved hypothetical protein.
 
     0.550
RCIX1951
Conserved hypothetical protein; Similar to orf2, orf11, orf12, orf13, orf14, orf15 of fosmid clone 4B7mr3.
       0.545
RCIX1953
Conserved hypothetical protein; Similar to orf2, orf11, orf12, orf13, orf14, orf15 of fosmid clone 4B7mr3.
       0.545
RCIX1976
Signal transduction serine/threonine kinase.
  
 
 0.518
RCIX211
Hypothetical protein.
 
  
 0.478
RCIX216
Putative ABC-type transport system, ATPase component.
 
  
 0.475
RCIX217
Putative ABC-type transport system, permease component (ABC-2 family).
 
  
 0.462
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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