Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCIX1953Conserved hypothetical protein; Similar to orf2, orf11, orf12, orf13, orf14, orf15 of fosmid clone 4B7mr3. (343 aa)    
Predicted Functional Partners:
RCIX1950
Conserved hypothetical protein.
 
     0.908
RCIX1951
Conserved hypothetical protein; Similar to orf2, orf11, orf12, orf13, orf14, orf15 of fosmid clone 4B7mr3.
 
    
0.782
RCIX1948
Conserved hypothetical protein.
 
     0.716
RCIX243
Conserved hypothetical protein.
 
     0.603
RCIX1932
Conserved hypothetical protein.
 
     0.588
RCIX1982
Hypothetical protein.
  
     0.580
RCIX1947
Putative glycosyltransferase (family 2).
       0.545
LRC298
Hypothetical protein; Identical to orf9 of fosmid clone 3D10mr4.
  
     0.524
RCIX1897
Conserved hypothetical protein.
  
     0.521
RCIX2491
Hypothetical protein.
  
     0.483
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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