Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1976Signal transduction serine/threonine kinase. (1827 aa)    
Predicted Functional Partners:
RCIX1862
Conserved GTP-binding protein (Ras family).
   
 0.942
RRC248
Hypothetical protein.
  
 0.878
RRC278
Hypothetical protein.
  
 0.873
RCIX1174
Putative acetoin utilization protein (histone deacetylase superfamily).
  
 
 0.863
ppiB
Peptidyl-prolyl cis-trans isomerase B (cyclophilin type).
  
 0.857
dnaK
Chaperonin Hsp70; Acts as a chaperone.
   
 0.848
aqpM
Putative aquaporin.
   
 
 0.825
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
    
 0.787
cdc48-3
Cell division cycle protein 48.
   
 0.782
RCIX2249
ATPase (AAA superfamily); Belongs to the AAA ATPase family.
   
 0.782
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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