STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbA-1Glucose-1-phosphate thymidylyltransferase. (242 aa)    
Predicted Functional Partners:
rfbB-1
dTDP-glucose 4,6-dehydratase.
 
 
 0.995
rfbB-2
Putative dTDP-glucose 4-6-dehydratase.
  
 0.942
pgm-2
Phosphoglucomutase/phosphomannomutase; Belongs to the phosphohexose mutase family.
 
 
 0.937
rfbD-1
dTDP-4-dehydrorhamnose reductase.
 
  
 0.931
eif2b2
Translation initiation factor 2B, subunit 2; Belongs to the eIF-2B alpha/beta/delta subunits family.
   
 0.919
eif2a
Translation initiation factor 2, alpha subunit.
   
 0.911
rfbC
dTDP-4-dehydrorhamnose 3,5 epimerase.
 
  
 0.910
eif2g
Translation initiation factor 2, gamma subunit; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily.
   
 0.822
RCIX2739
Conserved GTP-binding protein.
   
 0.822
tuf-2
Translation elongation factor 1, alpha subunit.
   
 0.822
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.