Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX1984Putative glycosyltransferase (family 2). (427 aa)    
Predicted Functional Partners:
RCIX363
Putative sugar-phosphate adenylyltransferase.
  
  
 0.872
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.756
ilvN
Acetolactate synthase, small subunit.
  
 
 0.725
ilvB
Acetolactate synthase, large subunit.
  
 
 0.724
pdc
Putative pyruvate decarboxylase; Similar to other TPP enzymes, such as pyruvate oxidase (Pox)(EC 1.2.3.3) and pyruvate dehydrogenase (Pdh) (EC 1.2.2.2).
  
 
 0.724
RCIX510
Hypothetical protein.
 
 
 0.719
LRC452
Hypothetical protein.
 
 
 0.713
RRC20
Hypothetical protein.
 
 
 0.708
LRC117
Hypothetical protein.
  
 
 0.667
LRC308
Hypothetical protein; Identical to orf20 of fosmid clone 3D10mr4.
  
 
 0.667
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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