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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbB-1dTDP-glucose 4,6-dehydratase. (320 aa)    
Predicted Functional Partners:
rfbC
dTDP-4-dehydrorhamnose 3,5 epimerase.
 
 
 0.999
rfbD-1
dTDP-4-dehydrorhamnose reductase.
 
 
 0.996
rfbA-1
Glucose-1-phosphate thymidylyltransferase.
 
 
 0.995
rfbD-2
dTDP-4-dehydrorhamnose reductase.
 
 
 0.981
ugd
UDP-glucose 6-dehydrogenase.
 
  
 0.956
rfbA-4
Glucose-1-phosphate thymidylyltransferase.
 
 
 0.952
rfbA-2
Putative glucose-1-phosphate thymidylyltransferase.
  
 
 0.945
rfbA-3
Glucose-1-phosphate thymidylyltransferase.
  
 
 0.945
rfbB-2
Putative dTDP-glucose 4-6-dehydratase.
 
 
0.941
RCIX1921
Aminotransferase (DegT family); Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.912
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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