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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCIX2009Conserved hypothetical protein. (119 aa)    
Predicted Functional Partners:
RCIX2008
Putative metallo-beta-lactamase.
     
 0.600
hgdD
2-hydroxyglutaryl-CoA dehydratase, component D.
       0.528
hgdC-2
2-hydroxyglutaryl-CoA dehydratase activator,component C (archerase).
       0.527
rfbC
dTDP-4-dehydrorhamnose 3,5 epimerase.
  
  
 0.474
ugd
UDP-glucose 6-dehydrogenase.
  
  
 0.453
LRC548
Putative glycosyltransferase (family 2).
  
  
 0.437
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.422
LRC591
Hypothetical protein.
 
   
 0.414
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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