STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hgdD2-hydroxyglutaryl-CoA dehydratase, component D. (387 aa)    
Predicted Functional Partners:
hgdC-2
2-hydroxyglutaryl-CoA dehydratase activator,component C (archerase).
 
 0.996
hgdC-1
Putative 2-hydroxyglutaryl-CoA dehydratase activator, component C (archerase).
 
 0.948
RCIX2009
Conserved hypothetical protein.
       0.528
tuf-2
Translation elongation factor 1, alpha subunit.
 
     0.512
RCIX2013
Putative signal transduction histidine kinase.
       0.506
pstS
High-affinity phosphate ABC-type import system,periplasmic component.
 
    0.424
rpl10e-2
50S ribosomal protein L10E; Belongs to the universal ribosomal protein uL16 family.
  
    0.404
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.