STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbCdTDP-4-dehydrorhamnose 3,5 epimerase. (157 aa)    
Predicted Functional Partners:
rfbB-1
dTDP-glucose 4,6-dehydratase.
 
 
 0.999
rfbD-1
dTDP-4-dehydrorhamnose reductase.
 
 
 0.997
ugd
UDP-glucose 6-dehydrogenase.
  
  
 0.994
rfbD-2
dTDP-4-dehydrorhamnose reductase.
 
 
 0.990
RCIX363
Putative sugar-phosphate adenylyltransferase.
 
  
 0.975
rfbB-2
Putative dTDP-glucose 4-6-dehydratase.
  
 
 0.952
rfbA-1
Glucose-1-phosphate thymidylyltransferase.
 
  
 0.910
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
     
 0.804
rfbB-3
dTDP-glucose 4,6-dehydratase; Identical to orf2 of fosmid clone 3D10mr4 gene synonyms: rmlB, cpsN.
  
 
 0.763
LRC548
Putative glycosyltransferase (family 2).
 
  
 0.758
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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