Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RCIX2021Putative phosphoesterase. (319 aa)    
Predicted Functional Partners:
LRC57
Putative single-stranded DNA-specific exonuclease (RecJ-like).
  
  
  0.915
recJ
Putative single-stranded DNA-specific exonuclease.
  
  
  0.913
RCIX2741
Putative phosphoesterase.
  
  
 
0.902
LRC298
Hypothetical protein; Identical to orf9 of fosmid clone 3D10mr4.
    
 
 0.684
pol2a
DNA-directed DNA polymerase D, small subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase; Belongs to the DNA polymerase delta/II small subunit family.
  
 
 
 0.672
RCIX950
Conserved hypothetical protein.
  
     0.585
RCIX1113
Conserved hypothetical protein.
  
     0.560
LRC226
Thioredoxin-like protein.
 
   
 0.519
LRC190
Hypothetical protein.
  
     0.505
RCIX1676
Hypothetical protein.
 
   
 0.462
Your Current Organism:
Methanocella arvoryzae
NCBI taxonomy Id: 351160
Other names: M. arvoryzae MRE50, Methanocella arvoryzae MRE50, Methanocella arvoryzae str. MRE50, Methanocella arvoryzae strain MRE50, uncultured methanogenic archaeon RC-I, uncultured methanogenic archaeon Rice Cluster I
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